Reporting
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Reporting

Generally, users want to know the data collected for different/ particular collection protocols based on different criterias. E.g., Saliva Samples from Male participants, Participants that are turning 18, Samples from the participants that have consented, etc. 

OpenSpecimen reporting modules help the users to search within or across collection protocols and various criteria to get the required results.

Training Video

Who can access the Query?

Fields description

Operators description

Example

 

Features

Features

Description

Features

Description

Create new queries

Create queries based on fields across standard, custom forms, and fields with complex expressions (AND, OR, NOT, hierarchical, and parenthesis).

See: Sample queries

Get counts (pivot tables)

Run the queries to get the count of participants and specimens that match the filters.

Get raw data

Run queries to get raw data from the system.

See: Query Results view

Save query

Save query so that it can be reused for later use.

Folders and sharing

Saved queries can be organized in folders and shared with other users. E.g., 2-3 users are working on shortlisting specimens for a project can share the same set of queries.

See: Share queries

Privileges

Data is filtered as per the user's privileges. E.g., if the user does not have PHI access, the patient identifier fields will be hidden.

Access to the Query module can be controlled using the Query privilege. 

See: Query Privilege (v6.3)

Data export (CSV)

Data from the query results view can be exported as a CSV file.

Custom fields and forms

The custom forms and field added via form builder is available for querying the reports.

Calculated fields

Difference between two dates (e.g., age at the collection, warm ischemia time, etc.)

See: Calculated fields (Temporal Queries)

Hierarchical queries

To support queries like, show any DNA aliquot whose parent specimen's "warm ischemia time" is less than x minutes.

Import and Export queries

One can import and export queries from one instance to another—E.g., test server to production server.

Aggregate functions

Supports functions like sum, max, min, etc.

Dashboards

Create visually appealing dashboards with graphs and numeric counters based on query results.

See: Dashboard changes using query



Default Queries

Query

Description

Query

Description

Cart specimens report query

Saved query to use for generating cart specimens report

Container specimens report query

Saved query to use for generating container specimens report

Distribution order data query

Saved query to use for creating distribution report when DP specific report is not configured

Shipment report query

Saved query to use for exporting shipment details

Specimen kit report query

Saved query to use for exporting specimen kit details



Got feedback or spotted a mistake?

Leave a comment at the end of this page or email contact@krishagni.com