{"type":"doc","content":[{"type":"paragraph","content":[{"text":"Collections for general biobanking are usually unplanned, i.e., there are no specific time points, and specimens get collected whenever they are available. For such cases, the unplanned specimen collection workflow of OpenSpecimen is best suited. You can use the add unplanned specimens page to do the following:","type":"text"}]},{"type":"extension","attrs":{"layout":"default","extensionType":"com.atlassian.confluence.macro.core","extensionKey":"toc","parameters":{"macroParams":{"_parentId":{"value":"113442889"}},"macroMetadata":{"macroId":{"value":"cb062dbf-5317-4421-9574-78d5c99e9388"},"schemaVersion":{"value":"1"},"title":"Table of Contents"}},"localId":"5f6223d3-2ebd-46c9-ac4d-98fca955654f"}},{"type":"heading","attrs":{"level":1},"content":[{"text":"Collect unplanned specimens","type":"text"}]},{"type":"heading","attrs":{"level":2},"content":[{"text":"Participant Centric Collection Protocol","type":"text"}]},{"type":"expand","attrs":{"title":"Click here to view the steps..."},"content":[{"type":"orderedList","attrs":{"order":1},"content":[{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"In the participant page, click on the dotted menu of the occurred visit and select ‘Collect Unplanned Specimens’","type":"text"},{"type":"hardBreak"}]},{"type":"mediaSingle","attrs":{"layout":"center","width":1077,"widthType":"pixel"},"content":[{"type":"media","attrs":{"__fileSize":88772,"__fileMimeType":"image/png","width":1077,"alt":"Screenshot 2024-07-25 at 6.14.39 PM.png","id":"5581640e-f69c-4d5e-8c96-7cb05530f5b5","collection":"contentId-113442889","type":"file","__fileName":"Screenshot 2024-07-25 at 6.14.39 PM.png","height":607}}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"You will be navigated to the ‘Collect Unplanned Specimens’ workflow","type":"text"}]},{"type":"mediaSingle","attrs":{"layout":"center","width":1260,"widthType":"pixel"},"content":[{"type":"media","attrs":{"__fileSize":91714,"__fileMimeType":"image/png","width":1308,"alt":"image-20240725-124903.png","id":"99b1e610-ffb5-47d2-86a4-1fbd6fd31172","collection":"contentId-113442889","type":"file","__fileName":"image-20240725-124903.png","height":511}}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"To collect multiple copies of the specimens with the same properties, specify count under 'Count' ","type":"text"}]},{"type":"mediaSingle","attrs":{"layout":"center","width":1260,"widthType":"pixel"},"content":[{"type":"media","attrs":{"__fileSize":79253,"__fileMimeType":"image/png","width":1327,"alt":"Screenshot 2024-07-25 at 6.20.28 PM.png","id":"93a6cbdf-5ec5-43bb-a8ce-3c62787db008","collection":"contentId-113442889","type":"file","__fileName":"Screenshot 2024-07-25 at 6.20.28 PM.png","height":546}}]},{"type":"paragraph","content":[{"text":" ","type":"text"}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"Enter further details and click on the 'Submit' button","type":"text"},{"type":"hardBreak"}]}]}]}]},{"type":"heading","attrs":{"level":2},"content":[{"text":"Specimen Centric Collection Protocol","type":"text"}]},{"type":"expand","attrs":{"title":"Click here to view the steps..."},"content":[{"type":"orderedList","attrs":{"order":1},"content":[{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"Navigate to specimen list-view page and click '+Add Specimen' button.","type":"text"}]},{"type":"mediaSingle","attrs":{"layout":"center","width":1114,"widthType":"pixel"},"content":[{"type":"media","attrs":{"__fileSize":77139,"__fileMimeType":"image/png","width":1468,"alt":"image-20250326-050941.png","id":"76046774-b213-4b56-a6b7-9f727ee310ea","collection":"contentId-113442889","type":"file","__fileName":"image-20250326-050941.png","height":440}}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"You will be navigated to the ‘Collect Unplanned Specimens’ workflow","type":"text"}]},{"type":"mediaSingle","attrs":{"layout":"center","width":1115,"widthType":"pixel"},"content":[{"type":"media","attrs":{"__fileSize":66661,"__fileMimeType":"image/png","width":1831,"alt":"image-20250326-051135.png","id":"8f6012c2-00c0-4b35-ad89-a87fd2e5733b","collection":"contentId-113442889","type":"file","__fileName":"image-20250326-051135.png","height":776}}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"To collect multiple copies of the specimens with the same properties, specify count under 'Count'.","type":"text"}]},{"type":"mediaSingle","attrs":{"layout":"center","width":1097,"widthType":"pixel"},"content":[{"type":"media","attrs":{"__fileSize":72461,"__fileMimeType":"image/png","width":1780,"alt":"image-20250326-051230.png","id":"769d2aaf-ff73-4a9e-b739-f10c2fed02bb","collection":"contentId-113442889","type":"file","__fileName":"image-20250326-051230.png","height":813}}]},{"type":"paragraph","content":[{"text":" ","type":"text"}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"Enter further details and click on the 'Submit' button","type":"text"}]}]}]}]},{"type":"heading","attrs":{"level":1},"content":[{"text":"Collect unplanned specimens of different types ","type":"text"}]},{"type":"expand","attrs":{"title":"Click here to view the steps..."},"content":[{"type":"orderedList","attrs":{"order":1},"content":[{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"In the participant’s overview page, click on the dotted menu of the desired visit and select option ‘Collect Unplanned Specimens’","type":"text"}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"Enter all valid details for collecting one specimen type and click on 'Add Another' to add another specimen type","type":"text"},{"type":"hardBreak"},{"type":"inlineExtension","attrs":{"extensionType":"com.atlassian.confluence.migration","extensionKey":"inline-media-image","parameters":{"width":"900","id":"8b70a858-a5df-4e68-861d-af93bb258b93","collection":"contentId-113442889","height":""}}},{"type":"hardBreak"}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"\"Copy Last\" options: These options are useful if you are creating specimens that are similar but with minor changes","type":"text"}]},{"type":"orderedList","attrs":{"order":1},"content":[{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"Copy last: Will make a copy of the last specimen without the aliquots","type":"text"}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"Copy Last With Aliquots: Will make a copy of the last specimen with the aliquots","type":"text"}]}]}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"Enter all the details and click on the 'Next' button","type":"text"},{"type":"hardBreak"},{"type":"inlineExtension","attrs":{"extensionType":"com.atlassian.confluence.migration","extensionKey":"inline-media-image","parameters":{"width":"900","id":"738f9d2c-7c77-44b3-9dad-9d00dd5a2778","collection":"contentId-113442889","height":""}}}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"Enter the quantity of the specimens to be collected, select container position and click on ‘Submit’ ","type":"text"},{"type":"hardBreak"},{"type":"inlineExtension","attrs":{"extensionType":"com.atlassian.confluence.migration","extensionKey":"inline-media-image","parameters":{"width":"900","id":"026b7447-97f3-4d90-893a-dbc7697f3df2","collection":"contentId-113442889","height":""}}},{"type":"hardBreak"}]},{"type":"extension","attrs":{"extensionType":"com.atlassian.confluence.migration","extensionKey":"__confluenceADFMigrationUnsupportedContentInternalExtension__","text":"","parameters":{"cxhtml":"

In the above example, all the labels are auto-generated. If the auto-generation of labels is off, a field ‘Labels’ will appear in the last step

","nestedContent":{"type":"doc","content":[{"type":"panel","attrs":{"panelType":"warning"},"content":[{"type":"paragraph","content":[{"text":"In the above example, all the labels are auto-generated. If the auto-","type":"text"},{"text":"generation of","type":"text"},{"text":" labels is off, a ","type":"text"},{"text":"field ‘Labels’ will appear in the last step","type":"text"}]}]}],"version":1},"reason":"A note macro in a list item can't be created or edited in the new editor."}}},{"type":"paragraph"}]}]}]},{"type":"heading","attrs":{"level":1},"content":[{"text":"Create aliquots while collecting unplanned specimens","type":"text"}]},{"type":"paragraph","content":[{"text":"When copying, you can either copy with the aliquots or without aliquots.","type":"text"}]},{"type":"expand","attrs":{"title":"Click here to view the steps..."},"content":[{"type":"orderedList","attrs":{"order":1},"content":[{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"In the participant page, click on the dotted menu of the desired visit and select option ‘Collect Unplanned Specimens’","type":"text"}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"Enter all details and check the checkbox of ‘Do you want to create aliquots?’ of the ‘ALIQUOT DETAILS’ section’","type":"text"}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"Enter details of the aliquots and click on 'Add Another' to add different aliquot types","type":"text"}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"Click on Next","type":"text"},{"type":"hardBreak"},{"type":"inlineExtension","attrs":{"extensionType":"com.atlassian.confluence.migration","extensionKey":"inline-media-image","parameters":{"width":"900","id":"f0f066e8-a6db-429d-8c81-a64de9505319","collection":"contentId-113442889","height":""}}},{"type":"hardBreak"}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":"In the next screen, specify quantity and container position and click on 'Submit' button","type":"text"},{"type":"hardBreak"},{"type":"inlineExtension","attrs":{"extensionType":"com.atlassian.confluence.migration","extensionKey":"inline-media-image","parameters":{"width":"900","id":"c87ed8be-a933-479f-ab53-c70399922f13","collection":"contentId-113442889","height":""}}}]}]},{"type":"listItem","content":[{"type":"paragraph","content":[{"text":" You can view the summary of the collected specimens along with all the aliquots, note that the system automatically creates the intermediate derived specimens","type":"text"},{"type":"hardBreak"},{"type":"inlineExtension","attrs":{"extensionType":"com.atlassian.confluence.migration","extensionKey":"inline-media-image","parameters":{"width":"900","id":"6af190fb-55bf-4dcd-8475-a0023e3001bf","collection":"contentId-113442889","height":""}}}]}]}]}]},{"type":"paragraph"},{"type":"heading","attrs":{"level":1},"content":[{"text":"Unplanned Derivatives/Aliquots","type":"text"}]},{"type":"paragraph","content":[{"text":"Depending on the needs or availability, you may often have to create a child or grandchild of a sample without prior planning. OpenSpecimen allows you to collect additional derivatives or aliquots from a specimen’s overview page.","type":"text"}]},{"type":"paragraph","content":[{"text":"For more details, refer to ","type":"text"},{"text":"collecting unplanned derivative/aliquot","type":"text","marks":[{"type":"link","attrs":{"href":"https://openspecimen.atlassian.net/wiki/x/jADDBg"}}]}]}],"version":1}

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