Upload Surgical Pathology Report (SPR)

Summary

This page contains documentation for upload surgical pathology report REST API. Use the HTTP POST method to call this API by passing a file as a path variable. The file can be text or PDF format.

In case of PDF format

The API will extract the text content from the PDF.
Subsequently, only a text format of the report is available (i.e. not PDF).
If you want to process the PDF to remove unwanted headers, footers, etc, you will need to write a custom plugin.

De-identify: By default, there is no de-identification support. You can develop and plugin custom deidentifier based on local needs.

Request Details

Use the following URL to upload surgical pathology report (SPR)

http[s]:<host>:<port>/openspecimen/rest/ng/visits/{visitId}/spr-file

Parameter	Details
id	Identifier of the visit.
file	Report file to upload

Result

The response will contain the file name of the uploaded report.

Example

URL	`http://<host>:<port>/openspecimen/rest/ng/visits/1/spr-file`
Method	POST
Content-Type	multipart/form-data
Request	file: spr.pdf
Response	spr.txt

Error Cases

Code	Applies to	Status Message
200	All resources	Surgical Pathology Report (SPR) has been uploaded successfully
400	All requests	Invalid parameters
401	All requests	User does not have sufficient rights to perform this operation
404	All requests	Visit specified in the requested operation does not exist
500	All requests	Internal Server Error. Report this error to the system administrator

OpenSpecimen