v11 Upgrade

When you export a CP definition file from a version lower and try to import it on v11, you will get below error

Error message: Error: NullPointerException:Cannot invoke "java.util.List.iterator()" because "units" is null(COMMON_SERVER_ERROR)

Solution:

Add the code "units" : [ ] in Collection Protocol (JSON) file and import CP JSON.

Find the below JSON file for the reference,

This error ‘unexpected ‘=' at character 27:’ is displayed when there is a skip logic defined in the form. The equality check has changed from ‘=’ to '==’ in the version 11.0

Solution:

Please refer to the wiki page Skip Logic for fields in Form (v11) for the solution.

Receive button

From v10.3 and higher, the receive feature is replaced by workflow. Users need to upload the correct receive workflow and connect it with the ‘Receive’ button. The workflow can be downloaded from/wiki/spaces/CAT/pages/2481192988: i) Standard Receive specimens ii) Receive Specimen and relabel.

Process Aliquot

From v11, the process aliquot feature is replaced by workflow. Users need to upload the process workflow. The workflow can be downloaded from/wiki/spaces/CAT/pages/2481192988: i) Process Aliquots.

Rapid Data Entry

From v11, the RED feature is replaced by workflow. Users need to upload the correct RDE workflow and connect it with the 'Rapid Data Entry' button. The workflow can be downloaded from/wiki/spaces/CAT/pages/2481192988: i) Register Participant and Collect Specimen.

From v11 below features are deprecated from OpenSpecimen Biospecimen Data entry pages:

1. Anonymize participant

2. Specimen Tree

3. Specimen Tab