In OpenSpecimen v3.4, bulk operation supports uploading files for file controls like consent, surgical pathology report (SPR), or any custom file type field, or form XMLs with their dropdowns.
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Go to ‘Collection Protocols ->Import->Biospecimen → Import → Biospecimen Data’. Select the record type ‘Consents’ and download the template file.
Fill up the CSV file with relevant consent data, refer to ‘Save/Update consents’. The ‘Consent Document Name’ column should contain the file name for the actual file that will be uploaded.
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3. Create a directory named ‘files’ containing actual consent files to be uploaded
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4. The files file folder contains the files to be imported as consent documents.
E.g., In the case of a custom file, the import will have the files to be imported.
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5. Create a zip file of the Consents CSV data file and ‘files’ directory
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6. Upload this zip file in OpenSpecimen to bulk import
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Refer to the sample file for the structure of the file attached below to be imported.
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Follow similar steps for other files like SPR, and custom form files.Note, and form XML imports (with their dropdown CSV folder).
The Import location and templates vary based on what you are importing:
SPR file upload: Use the ‘visits’ template
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Form data file upload: Use the corresponding custom forms template
Form XMLs: Use the Form Import