The specimen tree can be opened by clicking on the tree icon. By default, the tree displays <label> (<barcode>) and can be configured as needed.
In the example below, the fields included in the table are 'Description', 'Location' and 'Lab Number'. In the tree on the left, the fields displayed are specimen labels and specimen type abbreviations in the bracket. The specimen hierarchy is displayed in a collapsed view. That is, it shows only the first level of specimens like primary and its children. Any hierarchy below this will be collapsed. Info |
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- One single block "specimenTree" can be used to configure the tree and the table.
- The code has to be configured in workflow JSON in the new section "specimenTree".
- "summaryDescTmpl" is used to configure the specimen tree.
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Example 1: To include Specimen Type in the specimen tree Expand |
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Code Block |
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{
"name": "specimenTree",
"data": {
"defaultExpandDepth": 0,
"summaryDescTmpl" : "<span><span ng-if=\"!specimen.status || specimen.status == 'Pending'\">{{specimen.reqLabel}} </span><span ng-if=\"!!specimen.label\">{{specimen.label}}</span><span ng-if=\"!!specimen.barcode\">({{specimen.barcode}})</span><span ng-if=\"!!specimen.type\">({{specimen.type}})</span></span></span>",
"fields": [
{
"name": "specimen",
"caption": "Description",
"type": "specimen-description",
"width": "40%"
},{
"name": "specimen.type",
"baseField": "specimen.type"
},
{
"name": "specimen.label",
"baseField": "specimen.label"
}
]
}
} |
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Example 2: To include a Custom Field in the specimen tree Expand |
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Code Block |
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{
"name": "specimenTree",
"data": {
"defaultExpandDepth": 0,
"summaryDescTmpl" : "<span><span ng-if=\"!specimen.status || specimen.status == 'Pending'\">{{specimen.reqLabel}} </span><span ng-if=\"!!specimen.label\">{{specimen.label}}</span><span ng-if=\"!!specimen.barcode\">({{specimen.barcode}})</span><span ng-if=\"!!specimen.extensionDetail.attrsMap.tumor_id\">({{specimen.extensionDetail.attrsMap.tumor_id}})</span></span></span>",
"fields": [
{
"name": "specimen",
"caption": "Description",
"type": "specimen-description",
"width": "40%"
},{
"name": "specimen.type",
"baseField": "specimen.type"
},
{
"name": "specimen.label",
"baseField": "specimen.label"
}
]
}
} |
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Setting Display of Hierarchy Expand |
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Based on the property 'defaultExpandDepth', specimen table and tree hierarchy will be collapsed or expanded to a certain level. Refer to the code above to know how to use this property. Info |
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If it is set to the '1', it shows the primary specimen, and only one level below it will be displayed. The rest of the specimens under the hierarchy below it will be collapsed. If it is set to the '0', it shows the primary specimen only in a table or tree.
This way, it can be set to display any level. The number indicates the level you wish to display. If there are 6 levels then the code will be "defaultExpandDepth":6. Thus, depending upon the level, the value can be inserted. |
Example: On using the above JSON, below are pages where the changes will be reflected: 1. Specimens tab on the participant detail page with all the specimens for that particular participant:
2. Visit overview page:
3. Specimen overview page:
4. Visit page:
5. Specimen tree on the left with label and type abbreviation:
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For a detailed description about the specimen tree, refer to https://openspecimen.atlassian.net/wiki/x/MIDsC |