Specimen Derivative CSV
Got feedback or spotted a mistake?

Leave a comment at the end of this page or email contact@krishagni.com

Specimen Derivative CSV

Steps to Import CSV

  • Go to the collection protocols list page, click on the 'Import' button, and select option 'Biospecimen Data' OR

  • Go to the participants list page of the CP under which the derived specimens have to be created/updated, click on the 'More' button, and select the option 'Biospecimen Data'.

  • Select 'Specimen Derivatives' from the 'Select Record Type' dropdown and click on 'Download Template File' to download the template file.

  • Enter all valid data in the template file as mentioned in the 'Data Dictionary' table below.

  • Upload the filled template file in the 'Input Records File' field.

  • Click on the 'Validate and Import' button.

  • Refer 'Import status' to check the status of the import job.

Sample CSV

Download

Data Dictionary

Column Name

Datatype

Mandatory?

 

Description

Permissible Values

Validations

Column Name

Datatype

Mandatory?

 

Description

Permissible Values

Validations

CP Short Title

String

Yes

The collection protocol short title under which specimen is collected

 

This is mandatory only if specimen labels are not unique across collection protocols. This is a setting users can set in Admin settings. By default, labels are unique across the system.

Parent Specimen Label

String

Yes

 

 

Should label of a collected parent within the system

Specimen Label

String

Depends

 

 

Mandatory when the auto label generation is OFF or 'Manual Inputs Allowed For' is selected.

Barcode

String

No

 

 

 

Class

String

No

 

  • Tissue

  • Molecular

  • Cell

  • Fluid

If left blank system will add class based on specimen type in the input.

Type

String

Yes

 

Permissible Values File

Field not applicable to the aliquot as aliquot type would always be same as that of parent

Collection Status

String

No

 

  • Collected

  • Pending

  • Missed Collection

 

Pathological Status

 

No

 

  • Non-Malignant

  • Non-Malignant, Diseased

  • Pre-Malignant
    Malignant,

  • Pre-Invasive

  • Malignant, Invasive

  • Malignant

  • Metastatic

  • Not Specified

 

Initial Quantity

Double

No

 

 

Default Value: Not Specified

Available Quantity

Double

No

 

 

 

Concentration

Double

No

This field applies only to molecular specimens

 

 

Biohazard#1

String

No

Multiple values can be specified as:

Biohazard#1,

Biohazard#2,

Biohazard#3 and so on

  • Hepatitis A

  • Hepatitis B

  • Hepatitis C

  • HIV

  • Tuberculosis

Valid value from the list

Created On

Date

No

 

 

Select the correct date format from UI based on the data in the file

 

Freeze/Thaw Cycles

Number

No

Freeze/Thaw Cycle of the derivative

 

 

Increment Parent Freeze/Thaw Cycles

Number

No

Number by which parent freeze/thaw cycle is to be incremented

 

 

Close Parent

String

No

options- Yes/No or true/false

 

Parent specimen should be in collected -collection status

Comments

String

No

 

 

 

Location#Container

String

No

It needs to be specified if the specimen is not virtually located.

 

  1. The container specified should be existing.

  2. Suitable to hold the specimen (based on type and protocol)

  3. Should have available positions.

Location#Row

String

No

 

 

Position within the container at which the specimen is to be stored. If left blank, the system will allocate the next available position.

Location#Column

String

No

 

 

Location#Position

Number

No

The single number or linear position labels to identify slots within the container for storing specimen

 

Got feedback or spotted a mistake?

Leave a comment at the end of this page or email contact@krishagni.com