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Introduction:

This document aims to assist users in identifying and resolving common errors that may occur in v11 of OpenSpecimen. These issues often arise due to recent enhancements and updates to the software

Unable to import CP from lower version to v11

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When you export a CP definition file from a version lower and try to import it on v11, you will get below error

Error message: Error: NullPointerException:Cannot invoke "java.util.List.iterator()" because "units" is null(COMMON_SERVER_ERROR)

Solution:

Add the code "units" : [ ] in Collection Protocol (JSON) file and import CP JSON.

Find the below JSON file for the reference,

Blank specimen edit page

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This error ‘unexpected ‘=' at character 27:’ is displayed when there is a skip logic defined in the form. The equality check has changed from ‘=’ to '==’ in the version 11.0

Solution:

Please refer to the wiki page Skip Logic for fields in Form (v11) for the solution.

Missing Receive button

From v10.3 and higher, the receive feature is replaced by workflow. Users need to upload the correct receive workflow and connect it with the ‘Receive’ button. The workflow can be downloaded from/wiki/spaces/CAT/pages/2481192988: i) Standard Receive specimens ii) Receive Specimen and relabel.

If you can’t access /wiki/spaces/CAT/pages/2481192988, you need to send an email to support@krishagni.com.

Missing Process Aliquot button

From v11, the process aliquot feature is replaced by workflow. Users need to upload the process workflow. The workflow can be downloaded from/wiki/spaces/CAT/pages/2481192988: i) Process Aliquots.

If you can’t access /wiki/spaces/CAT/pages/2481192988, you need to send an email to support@krishagni.com.

Missing Rapid Data Entry button

From v11, the RED feature is replaced by workflow. Users need to upload the correct RDE workflow and connect it with the 'Rapid Data Entry' button. The workflow can be downloaded from/wiki/spaces/CAT/pages/2481192988: i) Register Participant and Collect Speciemen.

If you can’t access /wiki/spaces/CAT/pages/2481192988, you need to send an email to support@krishagni.com.

Not Supported JSON Configuration in v11

From v11, some JSON configurations are no longer supported. Most of these can be achieved through default or custom workflows. Please refer to the wiki page Not-Supported Configuration List from V11 for the full list of unsupported configurations.

Not Supported Configuration List from V11

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From v11 below features are deprecated from OpenSpecimen Biospecimen Data entry pages:

  1. Anonymize participant

  2. Specimen Tree

  3. Specimen Tab

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