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Introduction

OpenSpecimen allows the user you to track the shipment of samples from one site to another. For example, collection site to the central repository. To ship boxes, refer to Shipment of Containers

Prerequisites to ship

System will throw an error and will not allow you to ship if any of the below is not satisfied:

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Below are prerequisites to ship/receive specimens using OpenSpecimen:

  • The shipping site and receiving site should use the same instance of OpenSpecimen.
  • Both sites and the logged-in user should be part of the CP that has the specimens being shipped.
  • Cannot ship specimens from multiple sites in one shipment.
  • If the specimens being shipped are stored in a container, the site of the container should be sending site.
  • When receiving a shipment, the user can only store specimens in the containers of the receiving site.
  • The sending site should be the site to which specimens belong (Site under CP).
Info
titleDifference between 'Distribution' & 'Shipping'

Refer to Difference between distribution and shipment

Create

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You can create shipment shipments from multiple pages. The "Action" button now available in all specimen pages allows you to create shipments without having to add specimens to the cart.

Gliffy
imageAttachmentIdatt287997987
baseUrlhttps://openspecimen.atlassian.net/wiki
migration1
nameShipment
diagramAttachmentIdatt288194590
containerId14811246
timestamp1530883519771

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Click here to view the steps..
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titleExpand to view steps..
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You can create a new shipment by going to the "Shipment" module and scanning or typing in the specimen labels. This works well when you already have the list of specimens to ship.

Info
titleNote

From v7.1 onwards, users will be able to create shipments with past/future dates

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  • Go to the home page and click on the 'Shipments' card.
  • Click on the 'Create' button and select the option 'Specimens'
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In
  • On the 'Create Shipment' page, fill in the details and click on 'Next'.

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  • Add specimen labels/barcode and click on "Add".

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  • Selected specimens will appear on the next page.
In order to
  • To confirm the shipment, click on 'Ship'
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  • Further, the users selected in 'Notify Users' will receive an email with a link to the shipment details.
  • A 'Shipment Shipped Event' is created under all specimens that were shipped.
Info
  1. Once the shipment is “Shipped“, you cannot edit the “Notify Users“ field.

  2. You can see the “Notify Users“ field on the overview page for the Shipped shipments but cannot see it on the edit screen.


Ship from query

You can query specimens using the query interface and can ship from the results page.

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titleClick here to view the steps...
  • Go to the queries list page and click on 'Create' 
  • Create a query using any filters and click on 'View Records' to get the list of records
  • Select the specimen rows or click on 'Select All' from the results page and click on 'Specimens' → 'Ship'
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  • Enter the further details and click 'Ship' to ship the specimens.

Ship from cart

You can create a cart of the specimens to be shipped and can ship from the cart.

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  • Create a 'Specimen cart' or click on an existing cart from which the specimens have to be shipped.
  • Click on the 'Actions' button and select the option 'Ship'.
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  • Enter the further details and click on 'Ship' to ship the specimens.

Ship from other places

You can also ship specimens from the below-listed pages:

  1. CP specimen list
  2. Container specimen list
  3. Reserved specimens list
  4. Visit and specimen pages
  5. Participant specimen list

E.g., Ship specimens from the participant's specimen list

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titleClick here to view the steps...
  • Go to the overview page of the participant whose specimens
has
  • have to be shipped.
  • Click on the 'Specimens' icon from the left-side menu.
  • Select the specimens from the list, click on 'Actions' → 'Ship'

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Note
From v5.1, the

The ‘Actions’ button will appear only after selecting at least one specimen from the specimen tree.

  • Enter the further details and click 'Ship' to ship the specimens

Similarly, you can ship specimens from any specimen list pages.

Receive

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The receiver can receive the shipment by clicking on the 'Receive' button from the shipment details page.

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In order to
  • To receive the specimens, user from receiving site logs in and selects 'Shipments' from the homepage.
  • Select the shipment from the list and click on 'Receive'.
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  • Review the shipment details and click on 'Next' to confirm the receipt of samples.
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  • In the next step, you can choose the
    1. Received sample quantity 
    2. Quality (e.g., acceptable, unacceptable, etc.).
    3. Storage location: where the receiving site is storing the specimen
  • On saving, the system will create a 'Shipment Received Event' for each specimen in the shipment.
Info
  • Once the shipment is ”Received”, you cannot edit the “Notify Users“ field.

  • You can see the “Notify Users“ field on the overview page for the Received shipments but cannot see it on the edit screen.


Edit the specimen details while receiving a shipment

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Many a time, the specimens are collected in multiple hospitals for different studies. These specimens are labeled and then shipped to the receiving site receiving site facility for further processing and storage purposepurposes. For faster collection and data entry, the labeling at hospitals is done using generic labels like the randomly generated unique numbers, etc. However, when specimens are received at the receiving site, for better organization and retrieval purpose, the biobankers relabel the received specimens based on their type, collection container, study, or other established practices for better organization and retrieval purposesFrom v5.1, there

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There is a system-level setting

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that will allow you to relabel the shipped specimens while receiving the shipment. To enable/disable this setting, go to 'Settings' → 'Administrative' module → 'Relabel Shipment Specimens'  → Select option 'Enabled' and click on the 'Update' button.

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Once enabled, you can edit the specimen labels along with other details while receiving the shipment. From the shipped shipments overview page, click on the 'Receive' button→ Click on the 'Next'

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button,→ Change the specimen labels or other details, and click on the 'Receive' button.

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Edit

From v7.1 onwards, user will be able to you edit the shipment details as well. Shipments in draft, shipped, or received mode can be edited. Fields  

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Fields allowed to be edited are mentioned below,

  1. Shipment name
  2. Tracking URL
  3. Courier name
  4. Sender/receiver comments
  5. Shipped and received dates
  6. Received quality

The following attributes are not editable:

  1. Sending and receiving sites cannot be modified after the shipment is shipped.
  2. Specimens cannot be added or removed from the shipment after it is shipped.
  3. Specimen location and quantity cannot be modified after the shipment is received.

Shipment Report

Is It is a CSV file that you can download from the shipment page. The system comes with a default report and can be customized by the super-admin.

Download Report

Users You can download a shipment report as a CSV file with all the details of the shipment event events and sample information from the shipments overview page. 

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titleClick here to view the steps...
  • Go to the shipments list
page 
  • page.
  • Click on the shipment whose report has to be downloaded.
  • Click on 'Download Report' from the overview page.
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Configure

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Report

If you want to customize the shipment report, you will have to first create a saved query using the query interface. In the query results view of the query, you have to define the columns you wish to include in the CSV.

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titleClick here to view the steps...
  • Login as super admin and go to the homepage.
  • Click on 'Settings' →  'Common' module.
  • Click on the property 'Shipment Report'
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  •  Specify the identifier of the saved query and update the property.
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Create

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in bulk

You can create specimens shipment in bulk through bulk operation, for more details refer to 'Create/Update Specimens Shipment'.