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Create Aliquots for specified specimen

...

{

"count":1,

"quantityPerAliquot":2,

"positions":[

{"containerName":"cont1","position1":"a","position2":"b"},

{"containerName":"cont2","position1":"a","position2":"b"}

],

"specimenId":97

}

...

{

[

{

"id":1,

"tissueSite" : "S1",

"tissueSide" : "Tissue",

"pathologicalStatus" : "Not Specified",

"lineage": "Aliquot",

"initialQuantity": 2,

"availableQuantity": 2,

"specimenClass": "Tissue",

"specimenType": "Fresh Tissue",

"concentrationInMicrogramPerMicroliter": " 1",

"label": "29_1",

"activityStatus": "Active",

"isAvailable": "true",

"barcode": " 1111",

"comment": null,

"createdOn": "04-04-2014 ",

"collectionStatus": " Collected",

"specimenCollectionGroup": {"id": 1, "name": "TestSCG", ...},

"biohazardCollection": {"id":1 , "name": "RadioActive" , "type" : "RadioActive"},

"externalIdentifierCollection": {"id": 1, "name": "", "value": ""}

},

{

"id":2,

"tissueSite" : "S1",

"tissueSide" : "Tissue",

"pathologicalStatus" : "Not Specified",

"lineage": "Aliquot",

"initialQuantity": 2,

"availableQuantity": 2,

"specimenClass": "Tissue",

"specimenType": "Fresh Tissue",

"concentrationInMicrogramPerMicroliter": " 1",

"label": "29_1",

"activityStatus": "Active",

"isAvailable": "true",

"barcode": " 1111",

"comment": null,

"createdOn": "04-04-2014 ",

"collectionStatus": " Collected",

"specimenCollectionGroup": {"id": 1, "name": "TestSCG", ...},

"biohazardCollection": {"id":1 , "name": "RadioActive" , "type" : "RadioActive"},

"externalIdentifierCollection": {"id": 1, "name": "", "value": ""}

}

...

POST openspecimen/rest/ng/specimens/collect

Use this REST API is to create aliquots for existing specimen

Parameter Details :

This API accepts the array of aliquots details in JSON format. Each element in array is considered as single aliquot.

Below are parameters for single aliquot detail.

Parameter

Details

label

Label given to aliquot.

initialQty

Specimen quantity to create aliquot.

visitId

Visit id under which the parent specimen is present.

parentId

Parent specimen id of which aliquot will be created.

storageLocation [optional]

Storage location to store the created aliquot.

The location detail is also a JSON object, which contains :

name	Name of Container
positionX [optional]	X Position in container
positionY [optional]	Y Position in container

As Position is optional, If not given then aliquots will be stored virtually.
If only container name is given then first available position will be allocated in specified container.If position is not available then throws error message.

lineage

This property value should be "Aliquot". This property is used to show that we want to create aliquot of specimen.

status

This value shows the aliquot status. This value should be "Collected".

createdOn

The date:time on which the aliquot is created.

closeAfterChildrenCreation [optional]

This is boolean property. Possible values are true, false.

If value is present on parent specimen detail object then the parent specimen will be closed after aliquots are created.

children

This is the JSON array of specimen details object.

If we are specifying the the closeAfterChildrenCreation option to close the parent specimen then the children array will contain the object of aliquots details which needs to be created.

specimenPool

This is the JSON array of specimen detail object.

This object contains the details of specimens.

Result :

Response of this request contains array of created aliquots. If parent specimen is closed then parent specimen detail object with created aliquot details in children array.

API Example :

URL	openspecimen/rest/ng/specimens/collect
Request	application/json
Method	POST
json	[ { "initialQty":"10", "label":"label1", "visitId":1, "storageLocation":{"name":"Fluid Container"}, "parentId":1, "lineage":"Aliquot", "status":"Collected", "createdOn":"2015-12-03T04:37:03.779Z", "children":[], "specimensPool":[] }, { "initialQty":"10", "label":"label2", "visitId":1, "storageLocation":{"name":"Fluid Container"}, "parentId":1, "lineage":"Aliquot", "status":"Collected", "createdOn":"2015-12-03T04:37:03.779Z", "children":[], "specimensPool":[] } ]
Response	[ { "id": 12, "cpId": 1, "cprId": 1, "eventId": null, "visitId": 1, "visitName": "first visit", "cpShortTitle": "blood", "reqId": null, "sortOrder": null, "label": "label1", "barcode": null, "type": "Whole Blood", "specimenClass": "Fluid", "lineage": "Aliquot", "anatomicSite": "Autonomic nervous system, NOS", "laterality": "Not Applicable", "status": "Collected", "reqLabel": null, "pathology": "Malignant, Pre-Invasive", "initialQty": 10, "availableQty": 10, "available": true, "concentration": 10, "parentId": 1, "parentLabel": "blood1", "storageLocation": { "id": 1, "name": "Fluid Container", "positionX": "7", "positionY": "A" }, "storageType": null, "collectionContainer": null, "activityStatus": "Active", "createdOn": 1449117420000, "code": null, "distributed": null, "collectionEvent": null, "receivedEvent": null, "labelFmt": null, "biohazards": [ ], "comments": null, "closeAfterChildrenCreation": null, "children": [ ], "pooledSpecimenId": null, "pooledSpecimenLabel": null, "specimensPool": null, "closeParent": null, "poolSpecimen": null, "extensionDetail": null }, { "id": 13, "cpId": 1, "cprId": 1, "eventId": null, "visitId": 1, "visitName": "first visit", "cpShortTitle": "blood", "reqId": null, "sortOrder": null, "label": "label2", "barcode": null, "type": "Whole Blood", "specimenClass": "Fluid", "lineage": "Aliquot", "anatomicSite": "Autonomic nervous system, NOS", "laterality": "Not Applicable", "status": "Collected", "reqLabel": null, "pathology": "Malignant, Pre-Invasive", "initialQty": 10, "availableQty": 10, "available": true, "concentration": 10, "parentId": 1, "parentLabel": "blood1", "storageLocation": { "id": 1, "name": "Fluid Container", "positionX": "8", "positionY": "A" }, "storageType": null, "collectionContainer": null, "activityStatus": "Active", "createdOn": 1449117420000, "code": null, "distributed": null, "collectionEvent": null, "receivedEvent": null, "labelFmt": null, "biohazards": [ ], "comments": null, "closeAfterChildrenCreation": null, "children": [ ], "pooledSpecimenId": null, "pooledSpecimenLabel": null, "specimensPool": null, "closeParent": null, "poolSpecimen": null, "extensionDetail": null } ]

Response Status :

code	Applies to	Status Message
200	All resources	Aliquots has been created successfully
400	All requests	Invalid parameters, like label should be unique, Insufficient quantity, Specified container has no space to store aliquots
401	All requests	Authorization failed, User doesn't have Authority to create Aliquot
500	All requests	Internal server error, Encountered server error while performing operations

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