PUT openspecimen/rest/ng/specimens/{specimenId}
This API is available for updating the specimen.
Parameters:
This API accepts the specimen ID in url and specimen details in JSON format.
The parameters for specimen details are as follows:
| Parameter | Details |
|---|---|
| label | Label of specimen |
| specimenClass | Class of the specimen |
| type | Type of the specimen. The specimen type should belong to specimen class. |
| anatomicSite | Anatomic site of the |
...
List of mandatory fields:
- Label
- TissueSite
- TissueSide
- PathologicalStatus
- Lineage
- InitialQuantity
- collectionStatus
- SpecimenClass
- SpecimenType
- ActivityStatus
- Barcode
- Comment
- CreatedOn
- scgId
Method | URL |
|---|---|
| PUT | catissuecorespecimen. |
| pathology | Pathology status of specimen. |
| visitId | The visit ID under which the specimen is collected. |
| visitName | The visit name of specimen either visitId or visitName should be provided. |
| lineage | Lineage of specimen. |
| initialQty | Initial quantity of specimen. |
| availableQty | Available quantity of specimen. |
| laterality | Laterality of specimen. |
| status | Collection status of specimen. |
| concentration [optional] | Concentration of specimen. |
| parentId [optional] | Parent specimen ID. |
| storageLocation [optional] | The storage location in container where specimen will be stored. It is the JSON object containing following fields:
If the positionX and positionY are not given, then the next available position in storage container will be selected. If the storageLocation is not given for specimen, then the specimen will be made virtual. |
| storageType [optional] | Storage type of the specimen container. |
| activityStatus | Activity status of specimen. |
| createdOn | The date timestamp when the specimen is created. |
| biohazards [optional] | Biohazards of specimen. This is the JSON array containing strings of biohazards values. |
| barcode [optional] | The barcode of specimen. |
| extensionDetail [optional] | This is the JSON object containing the details of custom-fields. It has the below parameters:
|
Result:
The result of API call is the updated specimen detail JSON object.
| URL | openspecimen/rest/ng/specimens/{specimen_id} | Request2 | ||||
| Content-type | application/json | |||||
| json | { "activityStatusMethod | PUT | ||||
| Request JSON | { "id":2, "visitId":1, "visitName":"first visit", "label":"Activeplasma1", "barcode": "245095132null, "type":"Plasma", "specimenClass":"Fluid", "lineage":"New", "biohazardDetailsanatomicSite": [ ]"Greater curvature of stomach, NOS", "laterality":"Left", "collectionStatusstatus":"Collected", "reqLabel":"blood plasma", "pathology":"Non-Malignant, Diseased", "initialQty":250, "commentavailableQty":250, "available": "creating an adhoc specimen."true, "concentration":10, "parentId":null, "createdOnstorageLocation":{ "id"May 1, 2014 11:21:45 AM":1, "name":"Fluid Container", "positionX":"2", "positionY":"A" }, "collectionContainer":null, "activityStatus":"Active", "createdOn":1442993220000, "externalIdentifierDetailsbiohazards":[ "Hepatitis C", "Hepatitis B" ], "extensionDetail": { "label" : "sample_123", "lineage" : "New", "pathologicalStatus" : "Metastatic", "scgId" : 1, "true, } | |||||
Response | { "id": 2, "cpId": 1, "cprId": 1, "eventId": null, "visitId": 1, "visitName": "first visit", "cpShortTitle": "blood", "reqId": 2, "sortOrder": null, "label": "plasma1", "barcode": null, "type": "Plasma", "specimenClass": "Fluid", " | specimenTypelineage": "New", "anatomicSite": " | FecesGreater curvature of stomach, NOS", " | tissueSidelaterality": "Left", "status": "Collected",
| "tissueSite" : "Nasal cavity"Response |
{ "reqLabel": "blood plasma", "pathology": "Non-Malignant, Diseased", "initialQty": 250, "availableQty": 250, "available": true, "concentration": 10, "parentId": null, "parentLabel": null, "storageLocation": { "id": 1, "name": "Fluid Container", "positionX": "2", "positionY": "A" }, "storageType": "Auto", "collectionContainer": null, "activityStatus": "Active", "createdOn": 1442993220000, "code": null, "distributed": null, "collectionEvent": null, "barcodereceivedEvent": null, "245095132labelFmt": null, "biohazardDetailsbiohazards": [ "Hepatitis C", "Hepatitis B" ], "comments": null, "collectionStatus" : "Collected"closeAfterChildrenCreation": null, "children": [], "pooledSpecimenId": null, "pooledSpecimenLabel": null, "specimensPool": null, "commentcloseParent": "creating an adhoc specimen.", "createdOn" : "May 1, 2014 11:21:45 AMnull, "poolSpecimen": false, "extensionDetail": { }], } |
Error Cases :
code | Applies to | Status Message |
|---|---|---|
| 200 | All resources | Specimen has been created updated successfully |
| 400 | All requests | Invalid parameters, e.g duplicate label, duplicate barcode, invalid class Name etc |
| 401 | All requests | Authorization failed, User doesn’t have Authority to create specimen for the given collection protocol |
| 404 | All requests | Specimen not found, Specimen with the given identifier is not present in the system |
| 500 | All requests | Internal server error, Encountered server error while performing operations |
...