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Table of Contents

Introduction

Workflows The workflow (task-manager) plugin allows you to design different SOPs with OpenSpecimen, which can be reused across collection protocols. Each workflow can contain multiple tasks associated with each processing step. Tasks can be assigned to specific user groups.

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Info

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Workflow Administration

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JS files: Each task has its own configuration regarding what fields are to should be displayed, setting default values for fields, etc. 

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A workflow comprises multiple specimen actions and , each of these which has a specific type. The below table lists all the tasks that can be added within a workflow:

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titleTasks in heparin processing includes..
  • Receive specimens:

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  • Pool specimens and print labels:

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  • Enter ficoll isolation data:

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  • Pool specimens again:

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  • Derive PBMC:

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  • Pipette PBMC aliquots:

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  • Scan QR Code for all PBMC aliquots:

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Below is the zip file for the heparin processing workflow:

View file
namehep-process.zip

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titleTasks in serum processing includes..
  • Receive specimens: 

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  • Rest the blood tube for 60 minutes:

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  • Spin the blood tube for 10 minutes at 200g:

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  • Pipette Serum:

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  • Create serum aliquots:

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  • Scan QR Code for aliquots:

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Below is the zip file for the serum processing workflow:

View file
nameserum-process-utrecht (12).zip

3. Whole Blood Processing in Citrate Tube

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titleTasks in citrate tube processing includes..
  • Receive specimens:

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  • Centrifuge the citrate tube:

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  • Pipette plasma and buffy coat:

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  • Send plasma tubes for further processing and store buffy coat:

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  • Select the next task:

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  • Store buffy coat:

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  • Enter freezer freeze date and time for the buffy coat:

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  • Centrifuge plasma tubes:

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  • Select next tasks:

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  • Create plasma aliquots, store them and enter freezer the freeze date and time:

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  • Pipette supernatant:

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  • Store supernatant:

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  • Enter freeze date and time:

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Below is the file for the whole blood processing in the citrate tube workflow:

View file
namecitrate-plasma (1).zip

4. Tissue Processing

This example is for tissue specimen processing.

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titleTasks in tissue processing includes..
  • Obtain a fresh specimen:

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  • Assign next tasks:

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  • Select fixation and proceed:

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  • Enter dehydration details:

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  • Enter details for tissue clearing:

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  • Enter details for embedding:

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  • Create DNA and RNA aliquots:

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  • Freeze RNA and DNA aliquots:

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  • Store aliquots:

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Below is the file for the whole blood processing in the citrate tube workflow:

View file
nametissue-processing.zip