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FieldDescriptionValues
app.name

This field is useful for deploying multiple OpenSpecimen instances on the same Tomcat server. E.g. You can use "os-test" and "os-prod".

Typically this is "openspecimen".
tomcat.dirThe absolute path to the Tomcat directory
app.data_dir

Absolute path to OpenSpecimen data directory.

Best practice:

Create a folder in parallel to 'tomcat.dir' with the name "OpenSpecimenopenspecimen/data"

app.log_conf

Folder where the OpenSpecimen logs should be created

If left empty logs are created in "app.data_dir/logs"

datasource.jndiName of datasource configured in "context.xml"Usually, it is "jdbc/openspecimen".
datasource.type

"fresh": If your database schema is created by OpenSpecimen from scratch.

"Upgrade": if your database schema is upgraded from a caTissue database.

Note: The name is a bit misleading, we will fix this in v5.2.

"fresh" or "upgrade"
database.typeMySQL or Oracle

"mysql" or "oracle"

plugin.dir

Absolute path to the plugin directory.

Best practice:

Create a folder in parallel to 'tomcat.dir' with the name "OpenSpecimenopenspecimen/plugins"

Install / Upgrade

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